【研究用スクリプト】3次元データをヒートマップで表すスクリプト

with open("data.txt",mode = "r") as fp:
    lines = [i.replace("\n","").replace("[","").replace("]","")  for i in fp.readlines()]
    cell_coords_data = [[int(i.split(",")[0]),int(i.split(",")[1])] for i in lines if len(i)<20 and i != ""]
    fluo_data = np.asarray([[float(j) for j in i.split(',')] for i in lines if len(i)>20 and i != ""])
x,y,z = x,y,z = np.array([i[0] for i in cell_coords_data]),np.array([i[1] for i in cell_coords_data]),np.array([fluo_data[i[1]][i[0]] for i in cell_coords_data])


fluo_data = np.array(fluo_data)
brightness_data = fluo_data / max(fluo_data.flatten())

# カラーマップを適用するための関数を定義
def apply_colormap(data):
    colormap = plt.cm.inferno

    # データをカラーマップに適用
    colored_data = colormap(data)
    
    return colored_data

# カラーマップを適用したデータを取得
colored_brightness_data = apply_colormap(brightness_data)


# ヒートマップの描画
fig = plt.figure()
plt.imshow(colored_brightness_data, cmap='inferno', interpolation='nearest')
plt.colorbar()  # カラーバーを表示
plt.title("2D Heatmap")
fig.savefig("resulst.png",dpi = 500)

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